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Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. / Urich, Tim (Corresponding author); Lanzen, Anders; Stokke, Runar; Pedersen, Rolf-Birger; Bayer, Christoph; Thorseth, Ingunn; Schleper, Christa; Steen, Ida; Ovreas, Lise.

In: Environmental Microbiology, Vol. 16, No. 9, 2014, p. 2699-2710.

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Draft Genome Sequence of the Growth-Promoting Endophyte Paenibacillus sp. P22, Isolated from Populus. / Hanak, Anne-Mette; Nagler, Matthias; Weinmaier, Thomas; Sun, Xiaoliang; Fragner, Lena; Schwab, Clarissa; Rattei, Thomas; Ulrich, Kristina; Ewald, Dietrich; Engel, Marion; Schloter, Michael; Bittner, Romana; Schleper, Christa; Weckwerth, Wolfram.

In: Genome Announcements, Vol. 2, No. 2, 2014, p. e00276-14.

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Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland. / Gittel, Antje; Barta, Jiri; Kohoutova, Iva; Schnecker, Joerg; Wild, Birgit; Capek, Petr; Kaiser, Christina; Torsvik, Vigdis L.; Richter, Andreas; Schleper, Christa; Urich, Tim.

In: Frontiers in Microbiology, Vol. 5, No. 541, 541, 2014.

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Nitrososphaera viennensis sp. nov., an aerobic and mesophilic ammonia-oxidizing archaeon from soil and member of the novel archaeal phylum Thaumarchaeota. / Stieglmeier, Michaela; Klingl, Andreas; Alves, Ricardo Jorge Eloy; Rittmann, Simon Karl-Maria Rasso; Leisch, Nikolaus; Schleper, Christa.

In: International Journal of Systematic and Evolutionary Microbiology, Vol. 64, No. 8, 2014, p. 2738-52.

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Der Einfluss des Klimawandels auf die Biosphäre und Ökosystemleistungen. / Lexer, Manfred Josef; Rabitsch, Wolfgang; Grabherr, Georg; Dokulil, Martin; Dullinger, Stefan; Eitzinger, Josef; Englisch, Michael; Essl, Franz; Gollmann, Günter; Gottfried, Michael; Graf, Wolfram; Hoch, Gernot; Jandl, Robert; Kahrer, Andreas; Kainz, Martin; Kirisits, Thomas; Netherer, Sigrid; Pauli, Harald; Rott, Eugen; Schleper, Christa; Schmidt-Kloiber, Astrid; Schmutz, Stefan; Schopf, Axel; Seidl, Rupert; Vogl, Wolfgang; Winkler, Hans; Zechmeister, Harald.

Ö̈sterreichischer Sachstandsbericht Klimawandel 2014 (AAR14). Vol. 2 Wien : Verlag der Österreichischen Akademie der Wissenschaften, 2014. p. 467–556.

Publication: Contribution to book › Chapter

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Gene expression of lactobacilli in murine forestomach biofilms. / Schwab, Clarissa; Tveit, Alexander; Schleper, Christa; Urich, Tim.

In: Microbial Biotechnology, Vol. 7, No. 4, 2014, p. 347-359.

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CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus. / Zebec, Ziga; Manica, Andrea; Zhang, J.; White, M.F.; Schleper, Christa.

In: Nucleic Acids Research, Vol. 42, No. 8, 2014, p. 5280-5288.

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One-carbon substrate-based biohydrogen production: Microbes, mechanism, and productivity. / Rittmann, Simon Karl-Maria Rasso; Lee, Hyun Sook; Lim, Jae Kyu; Taejin, Kim; Lee, Jung-Hyun; Kang, Sung Gyun.

In: Biotechnology Advances, 2014.

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The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries. / Albers, Sonja-Verena; Forterre, Patrick; Prangishvili, David; Schleper, Christa.

In: Nature Reviews. Microbiology, Vol. 11, 10.2013, p. 713-719.

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Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea. / Alves, Ricardo Jorge Eloy; Wanek, Wolfgang; Zappe, Anna; Richter, Andreas; Svenning, Mette M.; Schleper, Christa; Urich, Tim.

In: The ISME Journal: multidisciplinary journal of microbial ecology, Vol. 7, No. 8, 08.2013, p. 1620-1631.

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Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. / Eme, Laura; Reigstad, Laila J.; Spang, Anja; Lanzen, Anders; Weinmaier, Thomas; Rattei, Thomas; Schleper, Christa; Brochier-Armanet, Celine.

In: Research in Microbiology, Vol. 164, No. 5, 06.2013, p. 425-438.

Publication: Contribution to journal › Article

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Archaea in Biogeochemical Cycles. / Offre, Pierre; Spang, Anja; Schleper, Christa.

In: Annual Review of Microbiology, Vol. 67, 2013, p. 437-457.

Publication: Contribution to journal › Article

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Responses of the terrestrial ammonia-oxidizing archaeon Ca. Nitrososphaera viennensis and the ammonia-oxidizing bacterium Nitrosospira multiformis to nitrification inhibitors. / Shen, Tianlin; Stieglmeier, Michaela; Dai, Jiulan; Urich, Tim; Schleper, Christa.

In: FEMS Microbiology Letters, Vol. 344, No. 2, 2013, p. 121-129.

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CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus. / Manica, Andrea; Schleper, Christa.

In: RNA Biology, Vol. 10, No. 5, 2013, p. 671-678.

Publication: Contribution to journal › Article

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Temporal and Spatial Coexistence of Archaeal and Bacterial amoA Genes and Gene Transcripts in Lake Lucerne. / Vissers, Elisabeth W.; Anselmetti, Flavio S.; Bodelier, Paul L; Muyzer, Gerard; Schleper, Christa; Tourna, Maria; Laanbroek, Hendrikus J.

In: Archaea - An International Microbiological Journal, Vol. 2013, 2013, p. 289478.

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Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. / Poulsen, Morten; Schwab, Clarissa; Jensen, Bent Borg; Engberg, Ricarda M; Spang, Anja; Canibe, Nuria; Hojberg, Ole; Milinovich, Gabriel John; Fragner, Lena; Schleper, Christa; Weckwerth, Wolfram; Lund, Peter; Schramm, Andreas; Urich, Tim.

In: Nature Communications, Vol. 4, 1428, 2013.

Publication: Contribution to journal › Article

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Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. / Vissers, Elisabeth W.; Blaga, Cornelia I.; Bodelier, Paul L.E.; Muyzer, Gerard; Schleper, Christa; Sinninghe Damste, Jaap S.; Tourna, Maria; Laanbroeck, Hendrikus J.

In: FEMS Microbiology Ecology, Vol. 83, No. 2, 2013, p. 515-526.

Publication: Contribution to journal › Article

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Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus. / Manica, Andrea; Zebec, Ziga; Steinkellner, Julia; Schleper, Christa.

In: Nucleic Acids Research, Vol. 41, No. 22, 2013, p. 10509-10517.

Publication: Contribution to journal › Article

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Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge. / Jorgensen, Steffen; Thorseth, Ingunn; Pedersen, Rolf-Birger; Baumberger, Tamara; Schleper, Christa.

In: Frontiers in Microbiology, Vol. 4, 299, 2013.

Publication: Contribution to journal › Article

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Rapid extraction of total RNA from an anaerobic sludge biocoenosis. / Rittmann, Simon Karl-Maria Rasso; Holubar, Peter.

In: Folia Microbiologica, 2013, p. 1-6.

Publication: Contribution to journal › Article

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Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. / Berry, David; Schwab, Clarissa; Milinovich, Gabriel John; Ben Mahfoudh, Karim; Decker, Thomas; Engel, Marion; Hai, Brigitte; Hainzl, Eva; Heider, Susanne; Kenner, Lukas; Rauch, Isabella; Strobl, Birgit; Wagner, Michael; Schleper, Christa; Urich, Tim; Loy, Alexander (Corresponding author).

In: The ISME Journal: multidisciplinary journal of microbial ecology, Vol. 6, No. 11, 11.2012, p. 2091-2106.

Publication: Contribution to journal › Article

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Calling the roll on Laxus oneistus immune defense molecules. / Bulgheresi, Silvia.

In: Symbiosis, Vol. 55, No. 3, 25.02.2012, p. 127-135.

Publication: Contribution to journal › Article

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Growth in width and FtsZ ring longitudinal positioning in a gammaproteobacterial symbiont. / Leisch, Nikolaus (Corresponding author); Verheul, Jolanda; Heindl, Niels Robert; Gruber-Vodicka, Harald; den Blaauwen, Jan L.; Bulgheresi, Silvia.

In: Current Biology, Vol. 22, No. 19, 2012, p. 831-832.

Publication: Contribution to journal › Short communication

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Metagenomic analysis of ammonia-oxidizing archaea affiliated with the soil group. / Bartossek, Rita; Spang, Anja; Weidler, Gerhard; Lanzen, Anders; Schleper, Christa.

In: Frontiers in Microbiology, No. 3, 2012, p. 208-208.

Publication: Contribution to journal › Article

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Bacterial Symbiosis Maintenance in the Asexually Reproducing and Regenerating Flatworm Paracatenula galateia. / Dirks, Ulrich (Corresponding author); Gruber-Vodicka, Harald; Leisch, Nikolaus; Bulgheresi, Silvia; Egger, Bernhard; Ladurner, Peter; Ott, Jörg.

In: PLoS ONE, Vol. 7, No. 4, 2012.

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Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. / Radax, Regina; Rattei, Thomas; Lanzen, Anders; Bayer, Christoph; Rapp, Hans Tore; Urich, Tim (Corresponding author); Schleper, Christa.

In: Environmental Microbiology, Vol. 14, No. 5, 2012, p. 1308-1324.

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Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil. / Damste, Jaap S. Sinninghe; Rijpstra, W Irene C; Hopmans, Ellen C.; Jung, Man-Young; Kim, Jong-Geol; Rhee, Sung-Keun; Stieglmeier, Michaela; Schleper, Christa.

In: Applied and Environmental Microbiology, Vol. 78, No. 19, 2012, p. 6866-6874.

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Ammonia-oxidizing archaea as main drivers of nitrification in cold-water sponges. / Radax, Regina; Hoffmann, Friederike; Rapp, Hans Tore; Leininger, Sven; Schleper, Christa (Corresponding author).

In: Environmental Microbiology, Vol. 14, No. 4, 2012, p. 909-923.

Publication: Contribution to journal › Article

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The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. / Spang, Anja; Poehlein, Anja; Offre, Pierre; Zumbragel, Sabine; Haider, Susanne; Rychlik, Nicolas; Nowka, Boris; Schmeisser, Christel; Lebedeva, Elena; Rattei, Thomas; Böhm, Christoph; Schmid, Markus Christian; Galushko, Alexander; Hatzenpichler, Roland; Weinmaier, Thomas; Daniel, Rolf; Schleper, Christa; Spieck, Eva; Streit, Wolfgang; Wagner, Michael (Corresponding author).

In: Environmental Microbiology, Vol. 14, No. 12, 2012, p. 3122-3145.

Publication: Contribution to journal › Article

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Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge. / Jorgensen, Steffen; Hannisdal, Bjarte; Lanzen, Anders; Baumberger, Tamara; Flesland, Kristin; Fonseca, Rita M F; Ovreas, Lise; Steen, Ida; Thorseth, Ingunn; Pedersen, Rolf-Birger; Schleper, Christa.

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 109, No. 42, 2012, p. E2846-E2855.

Publication: Contribution to journal › Article

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Nematode-bacterium symbioses-cooperation and conflict revealed in the "omics" age. / Murfin, Kristen E; Dillman, Adler R; Foster, Jeremy M; Bulgheresi, Silvia; Slatko, Barton E; Sternberg, Paul W; Goodrich-Blair, Heidi.

In: Biological Bulletin, Vol. 223, No. 1, 2012, p. 85-102.

Publication: Contribution to journal › Article

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The “double RNA” approach to simultaneously assess the structure and function of environmental microbial communities by meta-transcriptomics. / Urich, Tim; Schleper, Christa.

Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. Wiley-Blackwell, 2011.

Publication: Contribution to book › Chapter

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Microbial symbiont transmission: basic principles and dark sides. / Bulgheresi, Silvia.

Beneficial Microorganisms in Multicellular Life Forms. Unknown publisher, 2011. p. 299-312.

Publication: Contribution to book › Chapter

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Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms. / Gruber-Vodicka, Harald (Corresponding author); Dirks, Ulrich; Leisch, Nikolaus; Baranyi, Christian; Stöcker, Kilian; Bulgheresi, Silvia; Heindl, Niels Robert; Horn, Matthias; Lott, Christian; Loy, Alexander; Wagner, Michael; Ott, Jörg.

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 108, No. 29, 2011, p. 12078-12083.

Publication: Contribution to journal › Article

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The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. / Pester, Michael; Schleper, Christa; Wagner, Michael.

In: Current Opinion in Microbiology, Vol. 14, No. 3, 2011, p. 300-306.

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First detection of thiotrophic symbiont phylotypes in the pelagic marine environment. / Heindl, Niels Robert; Gruber-Vodicka, Harald; Bayer, Christoph; Lücker, Sebastian; Ott, Jörg; Bulgheresi, Silvia (Corresponding author).

In: FEMS Microbiology Ecology, Vol. 77, No. 1, 2011, p. 223-227.

Publication: Contribution to journal › Article

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Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. / Tourna, Maria; Stieglmeier, Michaela; Spang, Anja; Könneke, Martin; Schintlmeister, Arno; Urich, Tim; Engel, Marion; Schloter, Michael; Wagner, Michael; Richter, Andreas; Schleper, Christa (Corresponding author).

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 108, No. 20, 2011, p. 8420-8425.

Publication: Contribution to journal › Article

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UV-inducible DNA exchange in hyperthermophilic archaea mediated by type IV pili. / Ajon, Malgorzata; Froels, Sabrina; van Wolferen, Marleen; Stöcker, Kilian; Teichmann, Daniela; Driessen, Arnold J.M.; Grogan, Dennis W.; Albers, Sonja Verena; Schleper, Christa.

In: Molecular Microbiology, Vol. 82, No. 4, 2011, p. 807-817.

Publication: Contribution to journal › Article

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Sulfur-oxidizing chemolithotrophic proteobacteria dominate the microbiota in high arctic thermal springs on Svalbard. / Reigstad, Laila Johanne; Jorgensen, Steffen; Lauritzen, Stein-Erik; Schleper, Christa; Urich, Tim.

In: Astrobiology, Vol. 11, No. 7, 2011, p. 665-678.

Publication: Contribution to journal › Article

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Archaea: very diverse, often different but never bad? / Reeve, John N; Schleper, Christa.

In: Current Opinion in Microbiology, Vol. 14, No. 3, 2011, p. 271-273.

Publication: Contribution to journal › Article

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In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon. / Manica, Andrea; Zebec, Ziga; Teichmann, Daniela; Schleper, Christa.

In: Molecular Microbiology, Vol. 80, No. 2, 2011.

Publication: Contribution to journal › Article

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A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea. / Krupovic, Mart; Spang, Anja; Gribaldo, Simonetta; Forterre, Patrick; Schleper, Christa.

In: Biochemical Society Transactions, Vol. 39, No. 1, 2011, p. 82-88.

Publication: Contribution to journal › Article

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Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses. / Bulgheresi, Silvia; Gruber-Vodicka, Harald; Heindl, Niels Robert; Dirks, Ulrich; Kostadinova, Maria; Breiteneder, Heimo; Ott, Jörg.

In: The ISME Journal: multidisciplinary journal of microbial ecology, Vol. 5, No. 6, 2011, p. 986-998.

Publication: Contribution to journal › Article

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Preparation of high-molecular weight DNA and metagenomic libraries from soils and hot springs. / Reigstad, Laila Johanne; Bartossek, Rita; Schleper, Christa.

In: Methods in Enzymology, Vol. 496, 2011, p. 319-344.

Publication: Contribution to journal › Article

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"Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus. / Zaparty, Melanie (Corresponding author); Esser, Dominik; Gertig, Susanne; Haferkamp, Patrick; Kouril, Theresa; Manica, Andrea; Pham, Trong Khoa; Reimann, Julia; Schreiber, Kerstin; Sierocinski, Pawel; Teichmann, Daniela; van Wolferen, Marleen; von Jan, Mathias; Wieloch, Patricia; Albers, Sonja Verena; Driessen, Arnold J.M.; Klenk, Hans Peter; Schleper, Christa; Schomburg, Dietmar; van der Oost, John; Wright, Phil; Siebers, Bettina.

In: Extremophiles: life under extreme conditions, Vol. 14, No. 1, 2010, p. 119-142.

Publication: Contribution to journal › Article

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Diversity and abundance of Korarchaeota in terrestrial hot springs of Iceland and Kamchatka. / Reigstad, Laila Johanne; Jorgensen, Steffen; Schleper, Christa.

In: The ISME Journal: multidisciplinary journal of microbial ecology, Vol. 4, 2010, p. 346-356.

Publication: Contribution to journal › Article

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Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context. / Schleper, Christa (Corresponding author); Bartossek, Rita; Nicol, Graeme W.; Lanzen, Anders; Klenk, Hans Peter.

In: Environmental Microbiology, 2010.

Publication: Contribution to journal › Article

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Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. / Spang, Anja; Hatzenpichler, Roland; Brochier-Armanet, Celine; Rattei, Thomas; Tischler, Patrick; Spieck, Eva; Streit, Wolfgang; Stahl, David A.; Wagner, Michael; Schleper, Christa (Corresponding author).

In: Trends in Microbiology, Vol. 18, No. 8, 2010, p. 331-340.

Publication: Contribution to journal › Article

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A complex journey: transmission of microbial symbionts. / Bright, Monika (Corresponding author); Bulgheresi, Silvia.

In: Nature Reviews. Microbiology, Vol. 8, No. 3, 2010, p. 218-230.

Publication: Contribution to journal › Article

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Dynamics and functional relevance of ammonia-oxidizing archaea in agricultural soil. / Schauss, Kristina; Leininger, Sven; Schloter, M; Schleper, Christa.

In: Environmental Microbiology, Vol. 11, No. 2, 2009, p. 446-456.

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